STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N302_04186High mobility group protein B2. (208 aa)    
Predicted Functional Partners:
N302_10151
Actin-related protein 8; Plays an important role in the functional organization of mitotic chromosomes. Exhibits low basal ATPase activity, and unable to polymerize; Belongs to the actin family. ARP8 subfamily.
    
 0.770
N302_08375
Toll-like receptor 4.
   
 0.733
N302_13817
Lymphocyte antigen 96.
   
 0.711
N302_13691
General transcription factor IIH subunit 1.
    
 0.681
N302_04218
Histone H2A; Belongs to the histone H2A family.
   
 0.680
N302_01303
General transcription factor IIH subunit 3.
    
 0.674
N302_02066
Histone H2A.V; Belongs to the histone H2A family.
   
 0.674
N302_11005
TFIIH basal transcription factor complex helicase XPB subunit.
   
 0.671
N302_02252
Actin-related protein 5; Belongs to the actin family.
    
 0.670
N302_10186
RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.
    
 0.668
Your Current Organism:
Corvus brachyrhynchos
NCBI taxonomy Id: 85066
Other names: American crow, C. brachyrhynchos
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