N302_02370 protein (Corvus brachyrhynchos) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

N302_02370

Contactin-associated protein-like 5. (64 aa)

Predicted Functional Partners:

N302_14778

0.729

N302_08763

0.656

N302_02371

0.642

N302_14777

0.638

N302_15355

0.586

N302_15832

0.583

N302_16126

0.583

N302_15830

0.583

N302_15831

0.575

N302_08762

0.575

Your Current Organism:

Corvus brachyrhynchos

NCBI taxonomy Id: 85066
Other names: American crow, C. brachyrhynchos

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N302_02370	N302_02371	A0A091FMY8	A0A091F0C1	Contactin-associated protein-like 5.	Contactin-associated protein-like 5.	0.642
N302_02370	N302_08762	A0A091FMY8	A0A091EP66	Contactin-associated protein-like 5.	Neuronal cell adhesion molecule.	0.575
N302_02370	N302_08763	A0A091FMY8	A0A091EKB2	Contactin-associated protein-like 5.	Contactin-1.	0.656
N302_02370	N302_14777	A0A091FMY8	A0A091EEE0	Contactin-associated protein-like 5.	Neurofascin.	0.638
N302_02370	N302_14778	A0A091FMY8	A0A091EAF3	Contactin-associated protein-like 5.	Contactin-2.	0.729
N302_02370	N302_15355	A0A091FMY8	A0A091F0H0	Contactin-associated protein-like 5.	Contactin-5.	0.586
N302_02370	N302_15830	A0A091FMY8	A0A091EWZ3	Contactin-associated protein-like 5.	Contactin-3.	0.583
N302_02370	N302_15831	A0A091FMY8	A0A091EAI1	Contactin-associated protein-like 5.	Neural cell adhesion molecule L1-like.	0.575
N302_02370	N302_15832	A0A091FMY8	A0A091EBY1	Contactin-associated protein-like 5.	Contactin-6.	0.583
N302_02370	N302_16126	A0A091FMY8	A0A091ESY6	Contactin-associated protein-like 5.	Contactin-4.	0.583
N302_02371	N302_02370	A0A091F0C1	A0A091FMY8	Contactin-associated protein-like 5.	Contactin-associated protein-like 5.	0.642
N302_02371	N302_08762	A0A091F0C1	A0A091EP66	Contactin-associated protein-like 5.	Neuronal cell adhesion molecule.	0.575
N302_02371	N302_08763	A0A091F0C1	A0A091EKB2	Contactin-associated protein-like 5.	Contactin-1.	0.656
N302_02371	N302_14777	A0A091F0C1	A0A091EEE0	Contactin-associated protein-like 5.	Neurofascin.	0.638
N302_02371	N302_14778	A0A091F0C1	A0A091EAF3	Contactin-associated protein-like 5.	Contactin-2.	0.658
N302_02371	N302_15355	A0A091F0C1	A0A091F0H0	Contactin-associated protein-like 5.	Contactin-5.	0.586
N302_02371	N302_15830	A0A091F0C1	A0A091EWZ3	Contactin-associated protein-like 5.	Contactin-3.	0.583
N302_02371	N302_15831	A0A091F0C1	A0A091EAI1	Contactin-associated protein-like 5.	Neural cell adhesion molecule L1-like.	0.575
N302_02371	N302_15832	A0A091F0C1	A0A091EBY1	Contactin-associated protein-like 5.	Contactin-6.	0.583
N302_02371	N302_16126	A0A091F0C1	A0A091ESY6	Contactin-associated protein-like 5.	Contactin-4.	0.583