RBP3 protein (Sphenodon punctatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RBP3

Retinol binding protein 3. (1236 aa)

Predicted Functional Partners:

CLUL1

0.927

IMPG1

0.641

ENSSPUP00000014582

0.626

RHO

0.626

OPTC

0.574

RGR

0.568

ENSSPUP00000008188

0.551

CLU

0.536

RCVRN

0.508

OPN1SW

0.496

Your Current Organism:

Sphenodon punctatus

NCBI taxonomy Id: 8508
Other names: Hatteria punctata, S. punctatus, hatteria, tuatara

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CLU	RBP3	ENSSPUP00000013455	ENSSPUP00000012748	Clusterin.	Retinol binding protein 3.	0.536
CLUL1	ENSSPUP00000014582	ENSSPUP00000009276	ENSSPUP00000014582	Clusterin like 1.	annotation not available	0.432
CLUL1	RBP3	ENSSPUP00000009276	ENSSPUP00000012748	Clusterin like 1.	Retinol binding protein 3.	0.927
CLUL1	RHO	ENSSPUP00000009276	ENSSPUP00000022544	Clusterin like 1.	Rhodopsin.	0.432
ENSSPUP00000008188	RBP3	ENSSPUP00000008188	ENSSPUP00000012748	annotation not available	Retinol binding protein 3.	0.551
ENSSPUP00000014582	CLUL1	ENSSPUP00000014582	ENSSPUP00000009276	annotation not available	Clusterin like 1.	0.432
ENSSPUP00000014582	OPN1SW	ENSSPUP00000014582	ENSSPUP00000008962	annotation not available	Opsin 1, short wave sensitive.	0.644
ENSSPUP00000014582	RBP3	ENSSPUP00000014582	ENSSPUP00000012748	annotation not available	Retinol binding protein 3.	0.626
ENSSPUP00000014582	RCVRN	ENSSPUP00000014582	ENSSPUP00000013491	annotation not available	Recoverin.	0.872
ENSSPUP00000014582	RGR	ENSSPUP00000014582	ENSSPUP00000004577	annotation not available	Retinal G protein coupled receptor.	0.693
ENSSPUP00000014582	RHO	ENSSPUP00000014582	ENSSPUP00000022544	annotation not available	Rhodopsin.	0.910
IMPG1	RBP3	ENSSPUP00000023903	ENSSPUP00000012748	Interphotoreceptor matrix proteoglycan 1.	Retinol binding protein 3.	0.641
OPN1SW	ENSSPUP00000014582	ENSSPUP00000008962	ENSSPUP00000014582	Opsin 1, short wave sensitive.	annotation not available	0.644
OPN1SW	RBP3	ENSSPUP00000008962	ENSSPUP00000012748	Opsin 1, short wave sensitive.	Retinol binding protein 3.	0.496
OPN1SW	RCVRN	ENSSPUP00000008962	ENSSPUP00000013491	Opsin 1, short wave sensitive.	Recoverin.	0.513
OPN1SW	RGR	ENSSPUP00000008962	ENSSPUP00000004577	Opsin 1, short wave sensitive.	Retinal G protein coupled receptor.	0.705
OPN1SW	RHO	ENSSPUP00000008962	ENSSPUP00000022544	Opsin 1, short wave sensitive.	Rhodopsin.	0.644
OPTC	RBP3	ENSSPUP00000001844	ENSSPUP00000012748	Opticin.	Retinol binding protein 3.	0.574
RBP3	CLU	ENSSPUP00000012748	ENSSPUP00000013455	Retinol binding protein 3.	Clusterin.	0.536
RBP3	CLUL1	ENSSPUP00000012748	ENSSPUP00000009276	Retinol binding protein 3.	Clusterin like 1.	0.927