ENSSPUP00000013142 protein (Sphenodon punctatus)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSSPUP00000013142

annotation not available (136 aa)

Predicted Functional Partners:

ENSSPUP00000008065

0.945

ENSSPUP00000019064

0.945

ENSSPUP00000019117

0.945

ARID4B

0.895

ARID4A

0.895

SETD1B

0.883

ENSSPUP00000016602

0.880

RBBP5

0.877

LEO1

0.875

ENSSPUP00000011142

0.872

Your Current Organism:

Sphenodon punctatus

NCBI taxonomy Id: 8508
Other names: Hatteria punctata, S. punctatus, hatteria, tuatara

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structured XML interaction data, according to the 'PSI-MI' data standard

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARID4A	ARID4B	ENSSPUP00000023947	ENSSPUP00000020188	AT-rich interaction domain 4A.	AT-rich interaction domain 4B.	0.751
ARID4A	ENSSPUP00000008065	ENSSPUP00000023947	ENSSPUP00000008065	AT-rich interaction domain 4A.	annotation not available	0.855
ARID4A	ENSSPUP00000011142	ENSSPUP00000023947	ENSSPUP00000011142	AT-rich interaction domain 4A.	annotation not available	0.428
ARID4A	ENSSPUP00000013142	ENSSPUP00000023947	ENSSPUP00000013142	AT-rich interaction domain 4A.	annotation not available	0.895
ARID4A	ENSSPUP00000016602	ENSSPUP00000023947	ENSSPUP00000016602	AT-rich interaction domain 4A.	annotation not available	0.748
ARID4A	ENSSPUP00000019064	ENSSPUP00000023947	ENSSPUP00000019064	AT-rich interaction domain 4A.	annotation not available	0.855
ARID4A	ENSSPUP00000019117	ENSSPUP00000023947	ENSSPUP00000019117	AT-rich interaction domain 4A.	annotation not available	0.855
ARID4A	SETD1B	ENSSPUP00000023947	ENSSPUP00000015372	AT-rich interaction domain 4A.	SET domain containing 1B, histone lysine methyltransferase.	0.706
ARID4B	ARID4A	ENSSPUP00000020188	ENSSPUP00000023947	AT-rich interaction domain 4B.	AT-rich interaction domain 4A.	0.751
ARID4B	ENSSPUP00000008065	ENSSPUP00000020188	ENSSPUP00000008065	AT-rich interaction domain 4B.	annotation not available	0.879
ARID4B	ENSSPUP00000011142	ENSSPUP00000020188	ENSSPUP00000011142	AT-rich interaction domain 4B.	annotation not available	0.428
ARID4B	ENSSPUP00000013142	ENSSPUP00000020188	ENSSPUP00000013142	AT-rich interaction domain 4B.	annotation not available	0.895
ARID4B	ENSSPUP00000016602	ENSSPUP00000020188	ENSSPUP00000016602	AT-rich interaction domain 4B.	annotation not available	0.772
ARID4B	ENSSPUP00000019064	ENSSPUP00000020188	ENSSPUP00000019064	AT-rich interaction domain 4B.	annotation not available	0.855
ARID4B	ENSSPUP00000019117	ENSSPUP00000020188	ENSSPUP00000019117	AT-rich interaction domain 4B.	annotation not available	0.855
ARID4B	SETD1B	ENSSPUP00000020188	ENSSPUP00000015372	AT-rich interaction domain 4B.	SET domain containing 1B, histone lysine methyltransferase.	0.701
ENSSPUP00000008065	ARID4A	ENSSPUP00000008065	ENSSPUP00000023947	annotation not available	AT-rich interaction domain 4A.	0.855
ENSSPUP00000008065	ARID4B	ENSSPUP00000008065	ENSSPUP00000020188	annotation not available	AT-rich interaction domain 4B.	0.879
ENSSPUP00000008065	ENSSPUP00000011142	ENSSPUP00000008065	ENSSPUP00000011142	annotation not available	annotation not available	0.599
ENSSPUP00000008065	ENSSPUP00000013142	ENSSPUP00000008065	ENSSPUP00000013142	annotation not available	annotation not available	0.945