STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VSX2Visual system homeobox 2. (389 aa)    
Predicted Functional Partners:
ATOH7
Atonal bHLH transcription factor 7.
   
  
 0.646
FOXN4
Forkhead box N4.
      
 0.542
SIX3
SIX homeobox 3.
   
  
 0.478
SIX6
SIX homeobox 6.
   
  
 0.478
BHLHE22
Basic helix-loop-helix family member e22.
   
  
 0.464
GAP43
Growth associated protein 43.
      
 0.437
RCVRN
Recoverin.
      
 0.437
ISL1
ISL LIM homeobox 1.
      
 0.436
BHLHE23
Basic helix-loop-helix family member e23.
   
  
 0.422
LHX2
LIM homeobox 2.
      
0.416
Your Current Organism:
Sphenodon punctatus
NCBI taxonomy Id: 8508
Other names: Hatteria punctata, S. punctatus, hatteria, tuatara
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.