STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CNPPD1Cyclin Pas1/PHO80 domain containing 1. (470 aa)    
Predicted Functional Partners:
XRCC5
X-ray repair cross complementing 5.
    
 0.981
LIG4
DNA ligase 4.
    
 0.960
XRCC6
X-ray repair cross complementing 6.
    
 0.952
GPCPD1
Glycerophosphocholine phosphodiesterase 1.
    
 0.908
ENSSPUP00000005358
annotation not available
    
 0.884
ENSSPUP00000009320
annotation not available
     
 0.828
MSH3
mutS homolog 3.
   
 
 0.827
ENSSPUP00000018703
annotation not available
     
 0.826
MSH6
mutS homolog 6.
   
 
 0.822
LIG3
DNA ligase 3.
    
 0.819
Your Current Organism:
Sphenodon punctatus
NCBI taxonomy Id: 8508
Other names: Hatteria punctata, S. punctatus, hatteria, tuatara
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.