STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
treRTrehalose operon repressor; Derived by automated computational analysis using gene prediction method: Protein Homology. (244 aa)    
Predicted Functional Partners:
hutC
Histidine utilization repressor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.733
ORC24376.1
PTS beta-glucoside transporter subunit EIIBCA; Phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.698
ORC16132.1
Alpha,alpha-phosphotrehalase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.631
ORC22592.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.624
ORC24375.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
  
 0.549
ORC16100.1
PTS beta-glucoside transporter subunit EIIBCA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.537
ORC24498.1
RpiR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.474
ORC22260.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.441
ORC16431.1
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.441
ORC24499.1
PTS alpha-glucoside transporter subunit IIBC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.441
Your Current Organism:
Rothia nasimurium
NCBI taxonomy Id: 85336
Other names: CCUG 35957, CIP 106912, JCM 10909, R. nasimurium, Rothia nasimurium Collins et al. 2000, Rothia sp. M7SW7a, Rothia-like sp. CCUG 35957
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