Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
T45_00044Prenyltransferase and squalene oxidase repeat. (411 aa)    
Predicted Functional Partners:
ecfT
Energy-coupling factor transporter transmembrane protein.
 
     0.948
ykoD
Putative HMP/thiamine import ATP-binding protein.
 
     0.941
T45_00045
Hypothetical protein.
 
     0.940
T45_00048
Hypothetical protein.
 
     0.917
T45_07972
Fatty acid hydroxylase superfamily protein.
  
 0.800
tam_2
Trans-aconitate 2-methyltransferase.
    
 0.791
doxX_1
DoxX.
  
     0.768
T45_00557
Hypothetical protein.
  
     0.765
T45_07987
Hypothetical protein.
  
     0.754
T45_05783
Hypothetical protein.
  
     0.752
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
Server load: medium (46%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.