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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yjfF_1Inner membrane ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family. (346 aa)    
Predicted Functional Partners:
rbsA_2
Ribose import ATP-binding protein RbsA.
  0.998
ytfQ_1
ABC transporter periplasmic-binding protein YtfQ.
 
 0.995
xylG_1
Xylose import ATP-binding protein XylG.
  0.993
ytfT_1
Inner membrane ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 
0.990
ytfQ_2
ABC transporter periplasmic-binding protein YtfQ.
 
 0.969
xylH_1
Xylose transport system permease protein XylH; Belongs to the binding-protein-dependent transport system permease family.
 
  
 
0.951
rbsA_4
Ribose import ATP-binding protein RbsA; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
  0.939
rbsA_7
Ribose import ATP-binding protein RbsA; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
  0.938
rbsA_9
Ribose import ATP-binding protein RbsA.
  0.936
araG_3
Arabinose import ATP-binding protein AraG.
  0.933
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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