STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T45_00166Helix-turn-helix protein. (283 aa)    
Predicted Functional Partners:
T45_00167
Hypothetical protein.
 
   
 0.889
T45_04107
Hypothetical protein.
  
   
 0.808
T45_03726
Hypothetical protein.
  
   
 0.778
T45_00165
Hypothetical protein.
       0.739
T45_07507
Hypothetical protein.
  
     0.735
T45_02723
S-adenosyl methyltransferase.
  
     0.730
T45_02722
Hypothetical protein.
  
     0.723
T45_01939
Sensor protein BasS/PmrB.
  
     0.714
T45_07741
S-adenosyl methyltransferase.
  
     0.710
T45_03663
S-adenosyl methyltransferase.
  
     0.709
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.