Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
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Databases
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[Homology]
Score
cymRHTH-type transcriptional regulator CymR. (178 aa)    
Predicted Functional Partners:
iscS_1
Cysteine desulfurase; Belongs to the sulfur carrier protein TusA family.
  
 
 0.804
iscS_2
Cysteine desulfurase.
  
 
 0.804
nifU
NifU-like protein.
  
  
 0.609
bga_1
Beta-galactosidase precursor; Belongs to the glycosyl hydrolase 35 family.
       0.589
T45_00172
N-acetylmuramoyl-L-alanine amidase.
 
     0.552
T45_00170
Hypothetical protein.
       0.519
barA_2
Signal transduction histidine-protein kinase.
     
 0.470
nasF_1
uroporphyrinogen-III C-methyltransferase; Belongs to the precorrin methyltransferase family.
 
   
 0.446
abfA
Intracellular.
       0.406
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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