Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
abfAIntracellular. (504 aa)    
Predicted Functional Partners:
xylA_1
Xylose isomerase; Belongs to the xylose isomerase family.
 
  
 0.877
xynD_2
Arabinoxylan arabinofuranohydrolase precursor; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.803
xyoA
Putative xylitol oxidase.
  
  
  0.797
abnA
Extracellular endo-alpha-(1->5-L-arabinanase 1; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.794
T45_06518
Hypothetical protein.
    
 0.776
T45_05443
L-gulono-1,4-lactone dehydrogenase.
     
  0.770
xlnA_6
Endo-1,4-beta-xylanase A precursor.
     
 0.744
hypBA1_4
Non-reducing end beta-L-arabinofuranosidase.
 
   
 0.716
T45_00177
Hypothetical protein.
       0.709
hypBA1_1
Non-reducing end beta-L-arabinofuranosidase.
 
   
 0.675
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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