Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
araB_1L-arabinolactonase. (296 aa)    
Predicted Functional Partners:
iclR_1
Acetate operon repressor.
       0.805
vgb_2
Virginiamycin B lyase.
 
  
 0.765
T45_00183
Hypothetical protein.
       0.572
ghrB_3
Glyoxylate/hydroxypyruvate reductase B; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
  
 
 0.485
dgoD_1
D-galactonate dehydratase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
     0.456
gntK
Thermoresistant gluconokinase.
 
  
 0.444
dgoD_2
D-galactonate dehydratase.
 
     0.429
sodF1
Superoxide dismutase [Fe-Zn] 1; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
   
 
  0.426
araC_3
L-arabonate dehydratase; Belongs to the IlvD/Edd family.
 
  
 0.403
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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