Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
agaA_2Alpha-galactosidase A precursor. (698 aa)    
Predicted Functional Partners:
bga_3
Beta-galactosidase precursor.
 
  
  0.734
bga_1
Beta-galactosidase precursor; Belongs to the glycosyl hydrolase 35 family.
 
  
  0.727
lacZ_2
Beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.
 
  
 0.724
bga_4
Beta-galactosidase precursor; Belongs to the glycosyl hydrolase 35 family.
 
  
  0.722
lacZ_3
Beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.
 
  
 0.721
agaA_4
Alpha-galactosidase A precursor.
  
  
 
0.712
T45_03171
alpha-L-fucosidase.
 
     0.710
uidA_1
Beta-glucuronidase; Belongs to the glycosyl hydrolase 2 family.
 
  
 0.710
uidA_3
Beta-glucuronidase; Belongs to the glycosyl hydrolase 2 family.
 
  
 0.709
T45_08467
alpha-L-fucosidase.
 
     0.703
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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