Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
T45_00241aspartyl/Asparaginyl beta-hydroxylase. (251 aa)    
Predicted Functional Partners:
T45_06881
PLAT/LH2 domain protein.
  
     0.730
T45_05415
Trypsin.
  
 
  0.714
T45_09013
Hypothetical protein.
  
     0.711
T45_08396
Phosphatidylinositol mannoside acyltransferase.
    
 0.698
sprT_2
Trypsin precursor.
  
 
  0.696
T45_04677
Trypsin.
  
 
  0.691
sprT_1
Trypsin precursor.
  
 
  0.689
T45_02014
Trypsin.
  
 
  0.622
T45_00242
Hypothetical protein.
       0.503
T45_02730
Dolichyl-phosphate-mannose-protein.
     
 0.491
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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