Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
rspAStarvation-sensing protein RspA; Belongs to the mandelate racemase/muconate lactonizing enzyme family. (371 aa)    
Predicted Functional Partners:
gudX
Glucarate dehydratase-related protein; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
  
  
  0.768
dgoD_1
D-galactonate dehydratase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
  
 
0.727
T45_00261
Bacterial extracellular solute-binding protein.
 
     0.722
malF
Maltose transport system permease protein MalF.
 
     0.714
gudD
Glucarate dehydratase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
  
  
  0.624
rpiB_1
Ribose-5-phosphate isomerase B.
     
  0.610
rpiB_2
Ribose-5-phosphate isomerase B.
     
  0.610
rpe
Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
     
  0.610
vgb_2
Virginiamycin B lyase.
 
  
 0.585
araQ_1
L-arabinose transport system permease protein.
 
     0.578
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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