Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
T45_00264Hypothetical protein. (1052 aa)    
Predicted Functional Partners:
cex
Exoglucanase/xylanase precursor.
 
 
 
 0.814
abfB_1
Extracellular exo-alpha-L-arabinofuranosidase precursor.
 
 
   0.703
xynC
Glucuronoxylanase XynC precursor.
 
     0.699
T45_06518
Hypothetical protein.
 
  
  0.628
T45_08467
alpha-L-fucosidase.
  
     0.626
T45_03171
alpha-L-fucosidase.
  
     0.621
yesW
Rhamnogalacturonan endolyase YesW precursor.
  
 
   0.621
T45_05086
alpha-L-arabinofuranosidase B (ABFB.
  
     0.620
T45_06979
Alpha-glucosidase.
  
     0.617
engD
Endoglucanase D precursor; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
 
 0.617
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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