Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
narX_1Nitrate/nitrite sensor protein NarX. (493 aa)    
Predicted Functional Partners:
degU_1
Transcriptional regulatory protein DegU.
 
   0.945
barA_2
Signal transduction histidine-protein kinase.
  
 0.904
luxQ
Autoinducer 2 sensor kinase/phosphatase LuxQ.
  
 0.810
ytrF_1
ABC transporter permease YtrF precursor.
 
     0.772
liaR_2
Transcriptional regulatory protein LiaR.
 
   0.728
T45_00447
Putative ABC transporter ATP-binding protein.
       0.725
liaR_18
Transcriptional regulatory protein LiaR.
  
   0.714
vraR_8
Response regulator protein VraR.
  
   0.706
degU_9
Transcriptional regulatory protein DegU.
  
   0.701
liaR_8
Transcriptional regulatory protein LiaR.
  
   0.701
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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