Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yxlF_1Putative ABC transporter ATP-binding protein. (328 aa)    
Predicted Functional Partners:
T45_00478
ABC-2 family transporter protein.
 
     0.930
T45_00913
Hypothetical protein.
  
 
 0.660
T45_02048
ABC-2 family transporter protein.
 
     0.660
rbsA_6
Ribose import ATP-binding protein RbsA; Belongs to the binding-protein-dependent transport system permease family.
    
  0.660
T45_03018
ABC-2 family transporter protein.
 
     0.647
T45_06261
ABC-2 family transporter protein.
 
     0.643
T45_02046
ABC-2 family transporter protein.
 
     0.641
cydD
ATP-binding/permease protein CydD.
     
  0.598
liaR_1
Transcriptional regulatory protein LiaR.
       0.569
desK_2
Sensor histidine kinase DesK.
       0.569
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.