Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
wapA_2tRNA nuclease WapA precursor. (2171 aa)    
Predicted Functional Partners:
T45_00523
Hypothetical protein.
 
    0.876
T45_08678
Hypothetical protein.
 
    0.774
T45_07450
Hypothetical protein.
    0.771
T45_00277
Hypothetical protein.
 
    0.754
wapA_6
tRNA3(Ser-specific nuclease WapA precursor.
 
    0.693
T45_03835
Phosphotransferase enzyme family protein.
  
     0.616
T45_02641
Hypothetical protein.
  
     0.551
T45_02257
Helix-turn-helix domain protein.
  
     0.523
T45_02798
Glycosyl hydrolase family 92.
  
     0.515
T45_05301
Hypothetical protein.
  
     0.510
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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