STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T45_00523Hypothetical protein. (1170 aa)    
Predicted Functional Partners:
wapA_2
tRNA nuclease WapA precursor.
 
    0.876
wapA_1
tRNA(Glu)-specific nuclease WapA precursor.
 
    0.776
wapA_10
tRNA nuclease WapA precursor.
 
    0.773
T45_02218
Glucan endo-1,3-beta-glucosidase precursor.
 
    0.768
xlnA_4
Endo-1,4-beta-xylanase A precursor.
 
    0.765
bprV
Extracellular basic protease precursor.
   
 0.750
wapA_4
tRNA3(Ser-specific nuclease WapA precursor.
 
    0.743
xlnA_2
Endo-1,4-beta-xylanase A precursor.
 
    0.696
T45_03835
Phosphotransferase enzyme family protein.
  
     0.622
T45_02132
Calerythrin.
  
     0.574
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.