STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T45_00536Stage II sporulation protein E (SpoIIE). (714 aa)    
Predicted Functional Partners:
luxQ
Autoinducer 2 sensor kinase/phosphatase LuxQ.
 
 
 0.932
barA_2
Signal transduction histidine-protein kinase.
  
 
 0.875
afsQ1_1
Transcriptional regulatory protein AfsQ1.
 
 
  0.850
rsbV_1
anti-sigma-B factor antagonist; Belongs to the anti-sigma-factor antagonist family.
 
  0.843
rsbP_1
Phosphoserine phosphatase RsbP.
 
 
  0.814
T45_09072
Sensory histidine kinase AtoS.
 
 
 0.802
rsbP_2
Phosphoserine phosphatase RsbP.
  
     0.772
hemN_1
Oxygen-independent coproporphyrinogen-III oxidase 1; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.
       0.771
rsbU_5
Phosphoserine phosphatase RsbU.
  
     0.769
T45_03328
Stage II sporulation protein E (SpoIIE).
  
     0.768
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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