afsQ1_1 protein (Streptomyces turgidiscabies)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

afsQ1_1

Transcriptional regulatory protein AfsQ1. (191 aa)

Predicted Functional Partners:

luxQ

0.994

barA_2

0.993

gmr_2

0.885

T45_00536

0.850

rsbU_3

0.836

T45_09072

0.821

T45_07062

0.813

kinB

0.804

yeaP

0.795

rsbP_1

0.783

Your Current Organism:

Streptomyces turgidiscabies

NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T45_00536	T45_07062	T45_00536	T45_07062	Stage II sporulation protein E (SpoIIE).	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	0.526
T45_00536	T45_09072	T45_00536	T45_09072	Stage II sporulation protein E (SpoIIE).	Sensory histidine kinase AtoS.	0.802
T45_00536	afsQ1_1	T45_00536	T45_00538	Stage II sporulation protein E (SpoIIE).	Transcriptional regulatory protein AfsQ1.	0.850
T45_00536	barA_2	T45_00536	T45_05328	Stage II sporulation protein E (SpoIIE).	Signal transduction histidine-protein kinase.	0.875
T45_00536	gmr_2	T45_00536	T45_05878	Stage II sporulation protein E (SpoIIE).	Cyclic di-GMP phosphodiesterase Gmr.	0.535
T45_00536	luxQ	T45_00536	T45_00537	Stage II sporulation protein E (SpoIIE).	Autoinducer 2 sensor kinase/phosphatase LuxQ.	0.932
T45_00536	rsbP_1	T45_00536	T45_00823	Stage II sporulation protein E (SpoIIE).	Phosphoserine phosphatase RsbP.	0.814
T45_00536	rsbU_3	T45_00536	T45_01727	Stage II sporulation protein E (SpoIIE).	Phosphoserine phosphatase RsbU.	0.488
T45_07062	T45_00536	T45_07062	T45_00536	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	Stage II sporulation protein E (SpoIIE).	0.526
T45_07062	T45_09072	T45_07062	T45_09072	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	Sensory histidine kinase AtoS.	0.993
T45_07062	afsQ1_1	T45_07062	T45_00538	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	Transcriptional regulatory protein AfsQ1.	0.813
T45_07062	barA_2	T45_07062	T45_05328	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	Signal transduction histidine-protein kinase.	0.999
T45_07062	gmr_2	T45_07062	T45_05878	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	Cyclic di-GMP phosphodiesterase Gmr.	0.996
T45_07062	kinB	T45_07062	T45_03331	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	Alginate biosynthesis sensor protein KinB.	0.646
T45_07062	luxQ	T45_07062	T45_00537	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	Autoinducer 2 sensor kinase/phosphatase LuxQ.	0.999
T45_07062	rsbP_1	T45_07062	T45_00823	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	Phosphoserine phosphatase RsbP.	0.979
T45_07062	rsbU_3	T45_07062	T45_01727	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	Phosphoserine phosphatase RsbU.	0.931
T45_07062	yeaP	T45_07062	T45_06103	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	Putative diguanylate cyclase YeaP.	0.949
T45_09072	T45_00536	T45_09072	T45_00536	Sensory histidine kinase AtoS.	Stage II sporulation protein E (SpoIIE).	0.802
T45_09072	T45_07062	T45_09072	T45_07062	Sensory histidine kinase AtoS.	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	0.993