STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T45_00539long-chain-fatty-acid--CoA ligase FadD15. (624 aa)    
Predicted Functional Partners:
accD5_1
Putative propionyl-CoA carboxylase beta chain 5.
    
 0.865
dhbF_8
Dimodular nonribosomal peptide synthase.
  
 
 0.864
T45_01570
Hypothetical protein.
     
  0.850
baiB
Bile acid-coenzyme A ligase.
  
  
  0.840
T45_05201
long-chain-fatty-acid--CoA ligase FadD13.
  
  
 
0.808
barA_2
Signal transduction histidine-protein kinase.
  
 
  0.777
accC
Biotin carboxylase.
    
 0.749
accA1_2
Acetyl-/propionyl-coenzyme A carboxylase alpha chain.
    
 0.749
accA1_3
Acetyl-/propionyl-coenzyme A carboxylase alpha chain.
    
 0.749
accD5_3
Putative propionyl-CoA carboxylase beta chain 5.
    
 0.738
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.