Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
yurK_1Putative HTH-type transcriptional regulator. (259 aa)    
Predicted Functional Partners:
dasR_1
HTH-type transcriptional repressor DasR.
  
     0.753
dasR_2
HTH-type transcriptional repressor DasR.
  
     0.711
yvoA_5
HTH-type transcriptional repressor YvoA.
  
     0.696
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
     
  0.621
T45_00585
Hypothetical protein.
     
 0.599
lutR_8
HTH-type transcriptional regulator LutR.
  
    0.585
ftsK_1
DNA translocase FtsK.
     
 0.574
lldR_1
Putative L-lactate dehydrogenase operon regulatory protein.
  
    0.567
T45_00583
Hypothetical protein.
       0.557
lutR_7
HTH-type transcriptional regulator LutR.
  
     0.515
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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