Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
blaI_1Transcriptional regulator BlaI. (110 aa)    
Predicted Functional Partners:
T45_00699
Heat shock protein HtpX.
 
 
  0.973
T45_06263
Heat shock protein HtpX.
 
 
  0.891
htpX_2
Protease HtpX.
 
 
  0.873
T45_01678
Heat shock protein HtpX.
 
 
  0.837
T45_06754
Peptidase family M48.
 
 
  0.799
blaI_4
Transcriptional regulator BlaI.
  
     0.696
T45_00702
Twin arginine translocase protein A.
       0.690
T45_04050
Ankyrin repeats (3 copies.
    
  0.631
T45_07413
Putative lyase.
    
  0.631
copZ
Copper chaperone CopZ.
  
  
 0.611
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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