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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T45_00709Sarcosine oxidase, gamma subunit family. (221 aa)    
Predicted Functional Partners:
gcvT_1
Aminomethyltransferase; Belongs to the GcvT family.
 0.999
soxB
Sarcosine oxidase subunit beta.
 
 0.999
mlr_1
4-methylaminobutanoate oxidase; Belongs to the GcvT family.
 
 0.999
mlr_2
4-methylaminobutanoate oxidase.
 
 0.994
hcnC_1
Hydrogen cyanide synthase subunit HcnC precursor.
  
 0.988
gcvT_2
Aminomethyltransferase; Belongs to the GcvT family.
 
 0.984
gcvT_3
Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine.
 
 0.980
camA_1
Putidaredoxin reductase.
  
 0.978
thcD_2
Rhodocoxin reductase.
  
 0.978
T45_05634
D-amino acid dehydrogenase small subunit.
  
 0.949
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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