Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
gbuCGlycine betaine/carnitine transport binding. (329 aa)    
Predicted Functional Partners:
opuAB_1
Glycine betaine transport system permease.
 
 
 0.999
opuAA
Glycine betaine transport ATP-binding protein.
 
 0.998
gbuA
Glycine betaine/carnitine transport ATP-binding protein.
 
 0.991
opuAB_2
Glycine betaine transport system permease.
 
 
 0.990
mlr_1
4-methylaminobutanoate oxidase; Belongs to the GcvT family.
 
    0.808
barA_2
Signal transduction histidine-protein kinase.
     
 0.795
gbsA_1
Betaine aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
     0.773
T45_00709
Sarcosine oxidase, gamma subunit family.
 
  
 0.709
gcvT_1
Aminomethyltransferase; Belongs to the GcvT family.
 
     0.674
soxB
Sarcosine oxidase subunit beta.
 
     0.664
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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