Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
T45_00720dinB superfamily protein. (201 aa)    
Predicted Functional Partners:
T45_00721
HEAT repeat protein.
       0.773
T45_08278
Hypothetical protein.
  
     0.560
T45_03647
Hypothetical protein.
  
     0.542
T45_01529
Hypothetical protein.
  
     0.508
T45_00719
Hypothetical protein.
       0.465
T45_05308
dinB superfamily protein.
  
   
 0.426
T45_01618
Hypothetical protein.
 
     0.417
T45_09264
Major Facilitator Superfamily protein.
  
     0.417
T45_00820
FtsX-like permease family protein.
  
     0.411
T45_04330
Helix-turn-helix domain protein.
  
     0.405
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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