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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
deaDATP-dependent RNA helicase DeaD. (824 aa)    
Predicted Functional Partners:
rsbV_1
anti-sigma-B factor antagonist; Belongs to the anti-sigma-factor antagonist family.
       0.784
T45_00756
Serine-protein kinase RsbW.
       0.701
hppA
K(+)-insensitive pyrophosphate-energized proton; Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force.
       0.638
rsmC
Ribosomal RNA small subunit methyltransferase C; Belongs to the methyltransferase superfamily.
       0.607
T45_05779
Hypothetical protein; Belongs to the UPF0109 family.
  
   
 0.586
T45_01293
R3H domain protein.
  
   
 0.567
T45_00754
Hypothetical protein.
       0.496
uvrD2
ATP-dependent DNA helicase UvrD2.
 
   
 0.459
csp
Cold shock-like protein.
     
 0.419
hrpB_2
ATP-dependent RNA helicase HrpB.
      
 0.408
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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