Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
macB_1Macrolide export ATP-binding/permease protein. (251 aa)    
Predicted Functional Partners:
macB_2
Macrolide export ATP-binding/permease protein.
 0.986
T45_00829
Putative peptidoglycan binding domain protein.
 
 
 0.956
T45_06287
FtsX-like permease family protein.
  
 0.942
macB_6
Macrolide export ATP-binding/permease protein.
 0.899
T45_00828
Hypothetical protein.
 
     0.827
macB_3
Macrolide export ATP-binding/permease protein.
 
  0.766
ytrF_3
ABC transporter permease YtrF precursor.
 
  0.759
ytrF_1
ABC transporter permease YtrF precursor.
 
  0.755
T45_01581
Macrolide transporter ATP-binding /permease.
 
 0.680
ftsH_1
ATP-dependent zinc metalloprotease FtsH; Belongs to the AAA ATPase family.
  
     0.677
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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