Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
hoxNHigh-affinity nickel transport protein; Belongs to the NiCoT transporter (TC 2.A.52) family. (359 aa)    
Predicted Functional Partners:
T45_06258
Hypothetical protein.
  
     0.562
sigK_1
ECF RNA polymerase sigma factor SigK; Belongs to the sigma-70 factor family. ECF subfamily.
       0.516
rskA
anti-sigma-K factor RskA.
       0.516
ureA_2
Urease subunit alpha.
     
 0.515
cbiH
cobalt-precorrin-3B C(17-methyltransferase.
       0.507
T45_06303
Hypothetical protein.
  
     0.493
yveA_2
Aspartate-proton symporter.
  
     0.470
T45_06276
Hypothetical protein.
  
     0.466
pcp_2
Pseudomonalisin precursor.
  
     0.442
pcp_4
Pseudomonalisin precursor.
  
     0.415
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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