Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ydfH_1Putative HTH-type transcriptional regulator. (292 aa)    
Predicted Functional Partners:
csbB
Putative glycosyltransferase CsbB.
       0.873
ydfH_5
Putative HTH-type transcriptional regulator.
  
     0.765
mcbR_1
HTH-type transcriptional regulator McbR.
  
     0.759
davT
5-aminovalerate aminotransferase DavT; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
       0.745
lutR_10
HTH-type transcriptional regulator LutR.
  
    0.741
T45_00878
Hypothetical protein.
       0.710
lutR_9
HTH-type transcriptional regulator LutR.
  
    0.710
lldR_2
Putative L-lactate dehydrogenase operon regulatory protein.
  
    0.708
T45_08138
Bacterial regulatory proteins, gntR family.
  
     0.682
lutR_1
HTH-type transcriptional regulator LutR.
  
    0.671
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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