Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
abfB_1Extracellular exo-alpha-L-arabinofuranosidase precursor. (474 aa)    
Predicted Functional Partners:
dhbF_8
Dimodular nonribosomal peptide synthase.
  
  
 0.909
cex
Exoglucanase/xylanase precursor.
 
 
   0.899
xynAS9_4
Endo-1,4-beta-xylanase A precursor.
 
   0.848
xynAS9_2
Endo-1,4-beta-xylanase A precursor.
 
   0.815
xynB_5
Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.813
lgrD_2
Linear gramicidin synthase subunit D.
  
  
 0.808
xlnB
Endo-1,4-beta-xylanase B precursor; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
  
     0.764
xynZ_2
Endo-1,4-beta-xylanase Z precursor.
 
 
   0.760
xynZ_1
Endo-1,4-beta-xylanase Z precursor.
 
 
   0.755
celS_1
Endoglucanase S precursor; Belongs to the glycosyl hydrolase 12 (cellulase H) family.
  
     0.754
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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