Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
T45_00944Hypothetical protein. (329 aa)    
Predicted Functional Partners:
T45_00945
Hypothetical protein.
 
    
0.794
T45_00942
Hypothetical protein.
       0.756
T45_04463
Hypothetical protein.
  
 
   0.651
xlnA_10
Endo-1,4-beta-xylanase A precursor.
  
     0.631
T45_02915
Ricin-type beta-trefoil lectin domain protein.
  
     0.630
T45_05986
ABC-2 family transporter protein.
  
     0.580
T45_05987
ABC-2 family transporter protein.
  
     0.576
xlnA_2
Endo-1,4-beta-xylanase A precursor.
  
     0.558
T45_00744
Glucan endo-1,3-beta-glucosidase precursor.
  
     0.541
T45_00943
Hypothetical protein.
       0.529
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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