Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
T45_01003Hypothetical protein. (137 aa)    
Predicted Functional Partners:
T45_03646
3-demethylubiquinone-9 3-methyltransferase.
 
  
 0.690
serA_3
D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
    
  0.628
bphC_1
Manganese-dependent 2,3-dihydroxybiphenyl 1,2-dioxygenase.
    
  0.620
baeB_1
Putative polyketide biosynthesis zinc-dependent hydrolase BaeB.
  
 
  0.576
baeB_2
Putative polyketide biosynthesis zinc-dependent hydrolase BaeB.
  
 
  0.576
T45_01004
Hypothetical protein.
       0.428
T45_08040
Glyoxalase-like domain protein.
 
     0.428
ghrB_3
Glyoxylate/hydroxypyruvate reductase B; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
    
  0.426
tap_1
Tripeptidyl aminopeptidase precursor.
  
    0.418
maoI
Primary amine oxidase precursor.
     
  0.417
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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