STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T45_01054Glycosyl hydrolases family 43; Belongs to the glycosyl hydrolase 43 family. (285 aa)    
Predicted Functional Partners:
rhgT_1
Rhamnogalacturonan acetylesterase RhgT.
  
     0.762
hypBA1_2
Non-reducing end beta-L-arabinofuranosidase.
 
     0.753
xynD_2
Arabinoxylan arabinofuranohydrolase precursor; Belongs to the glycosyl hydrolase 43 family.
 
     0.753
T45_03110
Extracellular; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.750
rhgT_2
Rhamnogalacturonan acetylesterase RhgT.
  
     0.749
T45_04937
Extracellular; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.747
T45_03311
Extracellular exo-alpha-L-arabinofuranosidase precursor.
 
  
 0.739
T45_05074
Extracellular; Belongs to the glycosyl hydrolase 43 family.
   
 0.712
T45_02613
Extracellular; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.706
pelA_2
Pectate trisaccharide-lyase precursor.
 
   
 0.695
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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