Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
T45_01055Carbohydrate binding domain protein. (826 aa)    
Predicted Functional Partners:
bprV
Extracellular basic protease precursor.
   
 0.750
T45_06830
Hypothetical protein.
  
     0.655
T45_05033
beta-N-acetylhexosaminidase.
  
  
  0.642
T45_02630
Glycosyl hydrolases family 28; Belongs to the glycosyl hydrolase 28 family.
  
 
   0.571
T45_01607
Hypothetical protein.
    
   0.558
T45_07078
alpha-L-fucosidase.
  
     0.541
T45_01054
Glycosyl hydrolases family 43; Belongs to the glycosyl hydrolase 43 family.
       0.529
chiA1
Chitinase A1 precursor.
  
  
  0.521
T45_04444
alpha-L-fucosidase.
  
     0.492
strH
beta-N-acetylhexosaminidase precursor.
  
  
  0.481
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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