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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T45_01055Carbohydrate binding domain protein. (826 aa)    
Predicted Functional Partners:
T45_06173
Endoglucanase E1 precursor.
    
  0.773
engD
Endoglucanase D precursor; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
    
  0.773
bprV
Extracellular basic protease precursor.
   
 0.743
T45_02630
Glycosyl hydrolases family 28; Belongs to the glycosyl hydrolase 28 family.
  
  0.688
gdhB_1
Quinoprotein glucose dehydrogenase B precursor.
    
 0.661
T45_05033
beta-N-acetylhexosaminidase.
  
  0.656
T45_06830
Hypothetical protein.
  
     0.655
T45_01607
Hypothetical protein.
    
   0.579
T45_08452
Putative endoglucanase.
  
 
  0.567
T45_07078
alpha-L-fucosidase.
  
 
  0.551
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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