Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
T45_01059NADPH-dependent FMN reductase. (202 aa)    
Predicted Functional Partners:
T45_01062
Hypothetical protein.
 
     0.839
T45_01061
Iron-binding zinc finger CDGSH type.
 
     0.803
prmA
Ribosomal protein L11 methyltransferase.
       0.781
dps2
DNA protection during starvation protein 2; Belongs to the Dps family.
  
  
 0.766
T45_08491
NADH oxidase.
  
 
 0.721
T45_01281
Hypothetical protein.
   
    0.657
T45_06465
Hypothetical protein.
   
  
 0.655
fprA2
Flavo-diiron protein FprA2.
  
 
 0.563
katE
Catalase HPII; Serves to protect cells from the toxic effects of hydrogen peroxide.
 
  
 0.545
T45_01063
Hypothetical protein.
       0.527
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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