Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
T45_01177Hypothetical protein. (249 aa)    
Predicted Functional Partners:
T45_01178
Hypothetical protein.
  
 
 0.934
T45_00545
ComEC family competence protein.
  
  
 0.781
uvrD2
ATP-dependent DNA helicase UvrD2.
    
 0.749
T45_03568
Prephenate dehydrogenase.
   
    0.747
nagA
N-acetylglucosamine-6-phosphate deacetylase.
  
    0.713
gmr_2
Cyclic di-GMP phosphodiesterase Gmr.
  
    0.702
apt_1
Adenine phosphoribosyltransferase.
   
  
 0.642
apt_2
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
  
 0.642
barA_2
Signal transduction histidine-protein kinase.
  
  
 0.638
T45_09072
Sensory histidine kinase AtoS.
  
    0.617
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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