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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydcR_1Putative HTH-type transcriptional regulator. (455 aa)    
Predicted Functional Partners:
catD_1
3-oxoadipate enol-lactonase 2.
       0.783
dhbF_8
Dimodular nonribosomal peptide synthase.
  
 
 0.675
lysN_2
2-aminoadipate transaminase.
  
     0.660
kgd
Multifunctional 2-oxoglutarate metabolism enzyme.
   
 
 0.644
lysN_1
2-aminoadipate transaminase.
  
     0.634
yccS_1
Inner membrane protein YccS.
       0.571
trpE_1
Anthranilate synthase component 1.
   
 
 0.533
trpE_2
Anthranilate synthase component 1.
   
 
 0.533
trpE_3
Anthranilate synthase component 1.
   
 
 0.533
cmdD_1
Chondramide synthase cmdD.
  
 
  0.464
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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