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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yhhW_2Quercetin 2,3-dioxygenase; Belongs to the pirin family. (323 aa)    
Predicted Functional Partners:
tqsA_3
AI-2 transport protein TqsA.
  
  
 0.774
T45_01211
Hypothetical protein.
       0.673
yhhW_1
Quercetin 2,3-dioxygenase; Belongs to the pirin family.
 
     0.617
mmgC_1
acyl-CoA dehydrogenase.
       0.617
apeB
Putative M18 family aminopeptidase 2.
       0.604
T45_01215
Hypothetical protein.
       0.539
T45_01210
Hypothetical protein.
       0.499
hmgA
Homogentisate 1,2-dioxygenase; Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate.
 
   
 0.485
ligB_2
LigB family dioxygenase.
 
  
 0.463
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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