Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pbpA_1Penicillin-binding protein A. (490 aa)    
Predicted Functional Partners:
ftsW_2
Lipid II flippase FtsW; Belongs to the SEDS family.
 0.992
ftsW_3
Lipid II flippase FtsW; Belongs to the SEDS family.
 0.980
ftsW_1
Lipid II flippase FtsW; Belongs to the SEDS family.
 0.901
T45_01221
D-alanyl-D-alanine carboxypeptidase precursor; Belongs to the peptidase S11 family.
 
 
 0.841
pbpB
Penicillin-binding protein PbpB.
  
  
0.840
pbpG
Penicillin-binding protein 2D.
 
 
0.839
ponA1_3
Penicillin-binding protein 1A.
 
 
0.837
ponA1_2
Penicillin-binding protein 1A.
 
 
0.836
pbpF
Penicillin-binding protein 1F.
 
 
0.832
fhaB
FHA domain-containing protein FhaB.
 
  
 0.828
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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