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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pknB_3Serine/threonine-protein kinase PknB. (664 aa)    
Predicted Functional Partners:
garA_2
Glycogen accumulation regulator GarA.
 
 
 
 0.997
pstP_2
PP2C-family Ser/Thr phosphatase.
 
 0.988
pstP_1
PP2C-family Ser/Thr phosphatase.
 
 0.987
fhaA
FHA domain-containing protein FhaA.
 
 
 
 0.983
fhaB
FHA domain-containing protein FhaB.
 
 
 
 0.983
T45_05313
ABC transporter ATP-binding/permease protein.
  
 
 0.970
T45_07947
ABC transporter ATP-binding/permease protein.
  
 
 0.970
garA_1
Glycogen accumulation regulator GarA.
 
 
 
 0.967
T45_07426
FtsK/SpoIIIE family protein.
   
 
 0.963
T45_00664
FHA domain protein.
   
 
 0.956
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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