Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ponA1_2Penicillin-binding protein 1A. (908 aa)    
Predicted Functional Partners:
pbpB
Penicillin-binding protein PbpB.
 
 
 0.951
pbp
Beta-lactam-inducible penicillin-binding protein.
 
 
 0.901
pbpA_1
Penicillin-binding protein A.
 
 
0.836
pbpA_5
Penicillin-binding protein A.
 
 
0.835
pbpA_2
Penicillin-binding protein A.
 
 
0.830
dacB
D-alanyl-D-alanine carboxypeptidase DacB.
     
 0.799
T45_01221
D-alanyl-D-alanine carboxypeptidase precursor; Belongs to the peptidase S11 family.
   
 
 0.766
dacD
D-alanyl-D-alanine carboxypeptidase DacD.
   
 
 0.766
dacF
D-alanyl-D-alanine carboxypeptidase DacF; Belongs to the peptidase S11 family.
   
 
 0.766
T45_03994
Cell wall synthesis protein Wag31.
   
 
 0.752
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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