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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ponA1_2Penicillin-binding protein 1A. (908 aa)    
Predicted Functional Partners:
T45_03994
Cell wall synthesis protein Wag31.
   
 
 0.930
pbpB
Penicillin-binding protein PbpB.
 
 
 0.842
T45_01221
D-alanyl-D-alanine carboxypeptidase precursor; Belongs to the peptidase S11 family.
   
 
 0.824
dacD
D-alanyl-D-alanine carboxypeptidase DacD.
   
 
 0.824
dacF
D-alanyl-D-alanine carboxypeptidase DacF; Belongs to the peptidase S11 family.
   
 
 0.824
ponA1_1
Penicillin-binding protein 1A.
  
  
 
0.815
T45_04821
Hypothetical protein.
    
 
 0.803
pbpA_4
Penicillin-binding protein A.
 
 
 0.723
mltG-2
Putative aminodeoxychorismate lyase; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family.
  
   
 0.710
pbpA_3
Penicillin-binding protein A.
 
 
 0.694
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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