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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dinFDNA-damage-inducible protein F. (445 aa)    
Predicted Functional Partners:
crtB_1
All-trans-phytoene synthase.
   
 
 0.795
crtB_2
All-trans-phytoene synthase.
   
 
 0.795
crtB_3
All-trans-phytoene synthase.
   
 
 0.795
gap2_1
Glyceraldehyde-3-phosphate dehydrogenase 2; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
  
  
 0.784
gap2_2
Glyceraldehyde-3-phosphate dehydrogenase 2.
  
  
 0.784
T45_00960
Yip1 domain protein.
  
    0.658
rpsA_1
30S ribosomal protein S1.
  
    0.658
rpsA
Hypothetical protein.
  
    0.658
rpsA_2
30S ribosomal protein S1.
  
    0.658
T45_08148
Ankyrin repeats (3 copies.
    
 
 0.648
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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