STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ptpA_1Putative low molecular weight protein-tyrosine-phosphatase. (163 aa)    
Predicted Functional Partners:
baeB_1
Putative polyketide biosynthesis zinc-dependent hydrolase BaeB.
   
 
 0.948
baeB_2
Putative polyketide biosynthesis zinc-dependent hydrolase BaeB.
   
 
 0.948
T45_05604
Hypothetical protein.
     
 0.946
etp
Low molecular weight; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
  
  
  0.903
metB_1
Cystathionine gamma-synthase.
       0.884
T45_01332
Membrane protein of unknown function.
       0.884
T45_01333
Hypothetical protein.
     
 0.794
epsL
Putative sugar transferase EpsL.
  
 
 0.774
wcaJ
UDP-glucose:undecaprenyl-phosphate glucose-1-phosphate transferase.
  
 
 0.774
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
    
  0.748
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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