Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
appCCytochrome bd-II ubiquinol oxidase subunit 1. (502 aa)    
Predicted Functional Partners:
cydB
Cytochrome bd-I ubiquinol oxidase subunit 2.
 0.999
cydD
ATP-binding/permease protein CydD.
 
  
 0.997
pat_1
Putative phenylalanine aminotransferase; May catalyze the transamination reaction in phenylalanine biosynthesis; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family.
       0.696
mepM_1
Murein DD-endopeptidase MepM.
       0.636
panD
Aspartate 1-decarboxylase precursor; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.
   
  
 0.623
sdhC
Succinate dehydrogenase/Fumarate reductase.
     
 0.616
sdhA_1
Succinate dehydrogenase flavoprotein subunit.
     
 0.607
sdhA_2
Succinate dehydrogenase flavoprotein subunit.
     
 0.607
frdA
Fumarate reductase flavoprotein subunit.
     
 0.607
nuoL_1
NADH-quinone oxidoreductase subunit L.
     
 0.606
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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