Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
cydDATP-binding/permease protein CydD. (1178 aa)    
Predicted Functional Partners:
cydB
Cytochrome bd-I ubiquinol oxidase subunit 2.
 
  
 0.998
appC
Cytochrome bd-II ubiquinol oxidase subunit 1.
 
  
 0.997
mepM_1
Murein DD-endopeptidase MepM.
       0.694
devS_1
Redox sensor histidine kinase response regulator.
 
     0.676
T45_00392
Putative multidrug export ATP-binding/permease protein.
  
 
  0.652
T45_00393
Putative ABC transporter ATP-binding protein.
  
 
  0.652
msbA_1
Lipid A export ATP-binding/permease protein.
  
 
  0.652
lmrA
Multidrug resistance ABC transporter ATP-binding and permease protein.
  
 
  0.652
T45_03262
Putative ABC transporter ATP-binding protein.
  
 
  0.652
yheI_1
Putative multidrug resistance ABC transporter.
  
 
  0.652
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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