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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mepM_1Murein DD-endopeptidase MepM. (355 aa)    
Predicted Functional Partners:
cydD
ATP-binding/permease protein CydD.
       0.715
cydB
Cytochrome bd-I ubiquinol oxidase subunit 2.
       0.669
appC
Cytochrome bd-II ubiquinol oxidase subunit 1.
       0.660
pbpF
Penicillin-binding protein 1F.
  
     0.647
ponA1_2
Penicillin-binding protein 1A.
  
     0.641
ponA1_1
Penicillin-binding protein 1A.
  
     0.626
pbpG
Penicillin-binding protein 2D.
  
     0.615
ponA1_3
Penicillin-binding protein 1A.
  
     0.608
pat_1
Putative phenylalanine aminotransferase; May catalyze the transamination reaction in phenylalanine biosynthesis; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family.
       0.603
devS_1
Redox sensor histidine kinase response regulator.
       0.595
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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